Berens Lab

Neural Data Science for Vision Research

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Preprints

  1. Christian Leibig, Vaneeda Allken, Philipp Berens, Siegfried Wahl (2016): Leveraging uncertainty information from deep neural networks for disease detection. bioRxiv
  2. Behrens* C., T. Schubert*, S. Haverkamp, T. Euler, P. Berens (2016): Connectivity map of bipolar cells and photoreceptors in the mouse retina. bioRxiv link
  3. Franke* K., P. Berens*, T. Schubert, M. Bethge, T. Euler, T. Baden (2016):Balanced excitation and inhibition decorrelates visual feature representation in the mammalian inner retina. bioRxiv link
  4. Yatsenko D., J. Reimer, A. S. Ecker, E. Y. Walker, F. Sinz, P. Berens, A. Hoenselaar, R. J. Cotton, A. S. Siapas, A. S. Tolias (2015): DataJoint: managing big scientific data using MATLAB or Python. bioRxiv link
  5. Subramaniyan M., A. S. Ecker, S. S. Patel, J. R. Cotton, M. Bethge, P. Berens, A. S. Tolias (2015): Faster processing of moving compared to flashed bars in awake macaque V1 provides a neural correlate of the flash lag illusion. bioRxiv link

Journal articles

  1. Maria Diamantaki Markus Frey Philipp Berens Patricia Preston-Ferrer Andrea Burgalossi (2016) Sparse activity of identified dentate granule cells during spatial exploration.  eLife 2016;5:e20252 http://dx.doi.org/10.7554/eLife.20252
  2. Jiang X, S. Shen, F. Sinz, J. Reimer, C. R. Cadwell, P. Berens, A. S. Ecker, S. Patel, G. Denfield, E. Froudarakis, S. Li, E. Walker, A. S. Tolias (2016): Response to Comment on “Principles of connectivity among morphologically defined cell types in adult neocortex”, Science, 353 (6304), 1108 link
  3. L. Theis*, P. Berens*+, E. Froudarakis, J. Reimer, M. Roman-Roson, T. Baden, T. Euler, A. S. Tolias, M. Bethge+ (2016): Benchmarking spike rate inference in population calcium imaging, Neuron, 90(3), 471-482, link
  4. Baden T*, P Berens*, K Franke*, M Rezac, M Bethge, T Euler$: The functional diversity of retinal ganglion cells in the mouse (2016), Nature,529, 345-350, link
  5. Cadwell CR, A Palasantza, X Jiang, P Berens, Q Deng, M Yilmaz, J Reimer, S Shen, M Bethge, KF Tolias, R Sandberg, AS Tolias: Morphological, electrophysiological and transcriptomic profiling of single neurons using Patch-seq (2016), Nature Biotechnology, 34, 199-203, link
  6. Jiang X, S Shen, CR Cadwell CR, P Berens, F Sinz, AS Ecker, S Patel, AS Tolias: Principles of connectivity among morphologically defined cell types in adult neocortex (2015), Science, 350 (6264), aac9462 link
  7. Froudarakis, E., P. Berens+, A. S. Ecker, R. J. Cotton, F. H. Sinz, D. Yatsenko, P. Saggau, M. Bethge, A. S. Tolias+ (2014): Population code in mouse V1 facilitates read-out of natural scenes through increased sparseness, Nature Neuroscience, PDF
  8. Ecker, A. S., P. Berens, R. J. Cotton, M. Subramaniyan, G. H. Denfield, C. R. Cadwell, S. M. Smirnakis, M. Bethge, A. S. Tolias (2014): State-dependence of noise correlations in macaque primary visual cortex, Neuron, 81(1), 235-248 PDF
  9. Subramanian, M., A. S. Ecker, P. Berens, A. S. Tolias (2013): Macaque monkeys perceive the flash-lag illusion. PLoS ONE, 8(3): e58788 PDF
  10. Baden, T., P. Berens, M. Bethge, and T. Euler (2013): Spikes in Mammalian Bipolar Cells Support Temporal Layering of the Inner Retina. Current Biology, 23(1), 48-52 PDF
  11. Berens, P., A. S. Ecker, R. J. Cotton, W. J. Ma, M. Bethge, and A. S. Tolias (2012): A fast and simple population code for orientation in primate V1. The Journal of Neuroscience , 32(31), 10618-10626 PDF
  12. Ecker, A. S., P. Berens, A. S. Tolias, and M. Bethge (2011): The effect of noise correlations in populations of diversely tuned neurons. The Journal of Neuroscience, 31(40), 14272-14283 PDF
  13. Berens, P., A. S. Ecker, S. Gerwinn, A. S. Tolias and M. Bethge (2011): Reassessing optimal neural population codes with neurometric functions. Proceedings of the National Academy of Sciences 108(11), 4423-4428 PDF Supplement
  14. Ecker, A. S., P. Berens, G. A. Keliris, M. Bethge, N. K. Logothetis and A. S. Tolias (2010): Decorrelated Firing in Cortical Microcircuits. Science, 327(5965), 584-587 PDF Supplement
  15. Berens, P. (2009): CircStat: A Matlab Toolbox for Circular Statistics. Journal of Statistical Software 31(10), 1-21 PDF
  16. Macke*, J. H., P. Berens*, A. S. Ecker, A. S. Tolias and M. Bethge (2009): Generating Spike Trains with Specified Correlation Coefficients. Neural Computation 21(2), 397-423 PDF
  17. Berens, P., G. A. Keliris, A. S. Ecker, N. K. Logothetis and A. S. Tolias (2008): Feature selectivity of the gamma-band of the local field potential in primate primary visual cortex. Frontiers in Neuroscience 2(2), 199-207; Focused Review PDF
  18. Berens, P., G. A. Keliris, A. S. Ecker, N. K. Logothetis and A. S. Tolias (2008): Comparing the feature selectivity of the gamma-band of the local field potential and the underlying spiking activity in primate visual cortex. Frontiers in Systems Neuroscience 2(2) PDF

Conference Papers

  1. Berens, P.,S. Gerwinn, A. S. Ecker and M. Bethge (2009): Neurometric function analysis of population codes. Advances in Neural Information Processing Systems 22: Proceedings of the 2009 Conference, 90-98. (Eds.) Bengio, Y., D. Schuurmans, J. Lafferty, C. K. I. Williams, A. Culotta, MIT Press, Cambridge, MA, USA PDF
  2. Gerwinn, S. , P. Berens, and M. Bethge (2009): A joint maximum-entropy model for binary neural population patterns and continuous signals. Advances in Neural Information Processing Systems 22: Proceedings of the 2009 Conference, 620-628. (Eds.) Bengio, Y., D. Schuurmans, J. Lafferty, C. K. I. Williams, A. Culotta, MIT Press, Cambridge, MA, USA PDF
  3. Bethge, M. and P. Berens (2008): Near-Maximum Entropy Models for Binary Neural Representations of Natural Images. Advances in Neural Information Processing Systems 20: Proceedings of the 2007 Conference, 97-104. (Eds.) Platt, J. C., D. Koller, Y. Singer, S. Roweis, MIT Press, Cambridge, MA, USA PDF

Other

  1. Janschewski, J., P. Berens, C. Käppler (2014): Psychisch belastete Kinder und Jugendliche im Schulkontext – eine empirische Analyse schulischer Problemlagen anhand von Schulakten einer Klinikschule. Zeitschrift für Heilpädagogik (in German), 368-378
  2. Berens, P. (2013): The programming language of the brain [in german]. Bild der Wissenschaft (Supplement), 10, 14-17 PDF
  3. T. Baden, L. P. Godino, S. Yusuf, and P. Berens(2013): Neurowissenschaften in Afrika – Kooperationen und Perspektiven. Neuroforum, 19(2), 73-74 PDF
  4. Macke, J., P. Berens, and M. Bethge (2011): Statistical analysis of multi-cell recordings: linking population coding models to experimental data. Frontiers in Computational Neuroscience, 5(35) PDF
  5. Berens, P.,N. K. Logothetis and A. S. Tolias (in press): Local field potentials, BOLD and spiking activity – relationships and physiological mechanisms. In: Understanding visual population codes – towards a common multivariate framework for cell recording and functional imaging, 599-624.  (Eds.) Kriegeskorte, N. and G. Kreiman, MIT Press, Cambridge, MA, USA PDF Link

* denotes shared first authors, + denotes shared corresponding author

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